![]() The normal visualization is some kind of heat map where the rows correspond to the nodes in the network. attribute clustering: a list of node attributes or a single edge attribute is chosen to perform the clustering.There are two different types of clustering algorithms supported by clusterMaker: Will be available in a session that was saved after clustering. Hierarchical or k-Means clusters if either of those methods had beenīecause information about clusters is saved inĬytoscape attributes, the Eisen TreeView and Eisen KnnView options (without clustering), and options appropriate for displaying ![]() This will bring up the settings dialog for the selected algorithmĪ subset of the visualization options, including showing a heat map of the data Where algorithm is the clustering algorithm you wish to use (see Figure 2). New Cluster menu hierarchy under the Plugins main menu.Įach of the supported clustering algorithms appears as a separate Once clusterMaker is installed, it will install a Select clusterMaker and click the Install button.įigure 2. Select Analysis under Available for Install. Is available in the Analysis group of plugins. You must be running Cytoscape 2.8.2 or newer. To download clusterMaker using the plugin manager,
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